K:\MS-MEDLINE>rem #+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ K:\MS-MEDLINE>rem #+ K:\MS-MEDLINE>rem #+ Mumps ISR Software Library K:\MS-MEDLINE>rem #+ Copyright (C) 2006 by Kevin C. O'Kane K:\MS-MEDLINE>rem #+ K:\MS-MEDLINE>rem #+ Kevin C. O'Kane K:\MS-MEDLINE>rem #+ okane@cs.uni.edu K:\MS-MEDLINE>rem #+ K:\MS-MEDLINE>rem #+ K:\MS-MEDLINE>rem #+ This program is free software; you can redistribute it and/or modify K:\MS-MEDLINE>rem #+ it under the terms of the GNU General Public License as published by K:\MS-MEDLINE>rem #+ the Free Software Foundation; either version 2 of the License, or K:\MS-MEDLINE>rem #+ (at your option) any later version. K:\MS-MEDLINE>rem #+ K:\MS-MEDLINE>rem #+ This program is distributed in the hope that it will be useful, K:\MS-MEDLINE>rem #+ but WITHOUT ANY WARRANTY; without even the implied warranty of K:\MS-MEDLINE>rem #+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the K:\MS-MEDLINE>rem #+ GNU General Public License for more details. K:\MS-MEDLINE>rem #+ K:\MS-MEDLINE>rem #+ You should have received a copy of the GNU General Public License K:\MS-MEDLINE>rem #+ along with this program; if not, write to the Free Software K:\MS-MEDLINE>rem #+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA K:\MS-MEDLINE>rem #+ K:\MS-MEDLINE>rem #++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ K:\MS-MEDLINE>rem medline Combined.bat November 5, 2006 K:\MS-MEDLINE>rem delete any prior data bases K:\MS-MEDLINE>del key.dat K:\MS-MEDLINE>del data.dat K:\MS-MEDLINE>echo compile programs compile programs K:\MS-MEDLINE>date /t Tue 11/07/2006 K:\MS-MEDLINE>time /t 05:19 PM K:\MS-MEDLINE>call mumpsc CvtWikiFmt.mps ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating CvtWikiFmt.mps to C++: 37 lines of Mumps; 288 lines of C++ generated CvtWikiFmt.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:CvtWikiFmt.exe /stack:10000000 CvtWikiFmt.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... translate.c Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:translate.exe translate.obj ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating dictionary.mps to C++: 43 lines of Mumps; 374 lines of C++ generated dictionary.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:dictionary.exe /stack:10000000 dictionary.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating stopselect.mps to C++: 48 lines of Mumps; 378 lines of C++ generated stopselect.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:stopselect.exe /stack:10000000 stopselect.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating idf.mps to C++: 81 lines of Mumps; 727 lines of C++ generated idf.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:idf.exe /stack:10000000 idf.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating weight.mps to C++: 73 lines of Mumps; 1043 lines of C++ generated weight.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:weight.exe /stack:10000000 weight.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating restore.mps to C++: 2 lines of Mumps; 172 lines of C++ generated restore.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:restore.exe /stack:10000000 restore.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating dump.mps to C++: 2 lines of Mumps; 172 lines of C++ generated dump.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:dump.exe /stack:10000000 dump.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating tt.mps to C++: 41 lines of Mumps; 583 lines of C++ generated tt.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:tt.exe /stack:10000000 tt.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating docdoc3.mps to C++: 71 lines of Mumps; 823 lines of C++ generated docdoc3.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:docdoc3.exe /stack:10000000 docdoc3.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating medlineRetrieve.mps to C++: 72 lines of Mumps; 697 lines of C++ generated medlineRetrieve.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:medlineRetrieve.exe /stack:10000000 medlineRetrieve.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating reformatX.mps to C++: 49 lines of Mumps; 462 lines of C++ generated reformatX.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:reformatX.exe /stack:10000000 reformatX.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating stemsX.mps to C++: 37 lines of Mumps; 292 lines of C++ generated stemsX.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:stemsX.exe /stack:10000000 stemsX.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating discrim3.mps to C++: 129 lines of Mumps; 915 lines of C++ generated discrim3.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:discrim3.exe /stack:10000000 discrim3.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating jaccard-tt.mps to C++: 32 lines of Mumps; 350 lines of C++ generated jaccard-tt.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:jaccard-tt.exe /stack:10000000 jaccard-tt.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating cohesion.mps to C++: 39 lines of Mumps; 350 lines of C++ generated cohesion.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:cohesion.exe /stack:10000000 cohesion.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating cluster.mps to C++: 90 lines of Mumps; 954 lines of C++ generated cluster.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:cluster.exe /stack:10000000 cluster.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating ttfolder.mps to C++: 46 lines of Mumps; 523 lines of C++ generated ttfolder.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:ttfolder.exe /stack:10000000 ttfolder.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating tab.mps to C++: 64 lines of Mumps; 609 lines of C++ generated tab.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:tab.exe /stack:10000000 tab.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating index.mps to C++: 165 lines of Mumps; 1876 lines of C++ generated index.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:index.exe /stack:10000000 index.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating display.mps to C++: 118 lines of Mumps; 1207 lines of C++ generated display.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:display.exe /stack:10000000 display.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating index.mps to C++: 165 lines of Mumps; 1876 lines of C++ generated index.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:index.exe /stack:10000000 index.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating starttime.mps to C++: 30 lines of Mumps; 239 lines of C++ generated starttime.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:starttime.exe /stack:10000000 starttime.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... ... Compiling Mumps program The Mumps Compiler 9.00 Oct 28 2006 Translating endtime.mps to C++: 34 lines of Mumps; 257 lines of C++ generated endtime.cpp Microsoft (R) Incremental Linker Version 8.00.50727.42 Copyright (C) Microsoft Corporation. All rights reserved. /out:endtime.exe /stack:10000000 endtime.obj c:\mumpsc\lib\pcre.lib c:\mumpsc\lib\mumpslib1.lib Using Native Data Base .... Convert data base format Tue 11/07/2006 05:19 PM Conversion done - total time: *** elapsed time=86 ------------------- # delete any prior data bases Generate and sort word frequency list Tue 11/07/2006 05:21 PM Word frequency list done - total time *** elapsed time=307 ------------------- Count documents Document grep result: 50001 567632 4715644 "Select good words" Tue 11/07/2006 05:26 PM Good word selection time: *** elapsed time=0 ------------------- Generate and sort IDF weights Tue 11/07/2006 05:26 PM IDF time: *** elapsed time=591 ------------------- Create weighted doc vectors Tue 11/07/2006 05:36 PM QUERY_STRING = idfmin=10 Weighting time: *** elapsed time=157 ------------------- Dump/restore Old data base sizes: -rw-rw-rw- 1 user 0 13M 2006-11-07 17:39 data.dat -rw-rw-rw- 1 user 0 143M 2006-11-07 17:39 key.dat New data base sizes -rw-rw-rw- 1 user 0 3.7M 2006-11-07 17:39 data.dat -rw-rw-rw- 1 user 0 39M 2006-11-07 17:39 key.dat Dump/restore time: *** elapsed time=38 ------------------- Calculate and sort term-term matrix Tue 11/07/2006 05:39 PM Term-term time: *** elapsed time=859 ------------------- Calculate and sort cohesion matrix Tue 11/07/2006 05:54 PM Cohesion time: *** elapsed time=7 ------------------- Calculate and sort jaccard term-term matrix Tue 11/07/2006 05:54 PM Term-term time: *** elapsed time=7 ------------------- Calculate discrimination co-efficients Tue 11/07/2006 05:54 PM discrim.mps time: *** elapsed time=196 ------------------- Dump/restore Tue 11/07/2006 05:57 PM Old data base size: -rw-rw-rw- 1 user 0 8.3M 2006-11-07 17:57 data.dat -rw-rw-rw- 1 user 0 89M 2006-11-07 17:57 key.dat New data base size: -rw-rw-rw- 1 user 0 4.8M 2006-11-07 17:58 data.dat -rw-rw-rw- 1 user 0 47M 2006-11-07 17:58 key.dat dump/restore end: *** elapsed time=45 ------------------- Calculate document-document matrix Tue 11/07/2006 05:58 PM QUERY_STRING = ddmin=9 Doc-doc time: *** elapsed time=7 ------------------- Calculate clusters Tue 11/07/2006 05:58 PM Cluster time: *** elapsed time=0 ------------------- Calculate hierarchy Tue 11/07/2006 05:58 PM Hierarchy time: *** elapsed time=3 ------------------- Calculate tables Tue 11/07/2006 05:58 PM Content-type: text/html Mumps Web Folders
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Hierarchy time *** elapsed time=13 ------------------- Tue 11/07/2006 05:58 PM "test query is alcohol" Enter query: 12045475 The cardiovascular effects of alcohol. 17611651 Alcohol, stroke and coronary artery disease. 6007 Alcohol and the elderly: relationships to illness and smoking. 6841613 Self-reported alcohol use: a longitudinal study of 12,994 adults. 22458065 Alcohol counselling of 85 pregnant problem drinkers: effect on drinking and fetal outcome. 22109381 Independent dysmorphology evaluations at birth and 4 years of age for children exposed to varying amounts of alcohol in utero. 25429626 Effect of rate of rise of blood alcohol on outcome of cardiac injury. 10240885 Effects of a single moderate dose of alcohol on blood pressure, heart rate and associated metabolic and endocrine changes. 3081067 The Alcohol Expectancy Questionnaire: an instrument for the assessment of adolescent and adult alcohol expectancies. 12252146 DSM-III criteria for alcohol abuse: associations with alcohol consumption behavior [published erratum appears in Alcohol Clin Exp Res:1988 Feb;12(1):29] 29266964 Alcohol use by persons with recent spinal cord injury. 6800170 Neonatal antidepressant administration suppresses concurrent active (REM) sleep and increases adult alcohol consumption in rats. 20248126 Cardiac function after alcohol ingestion in patients with ischemic heart disease and cardiomyopathy: a controlled study. Time used: 0 seconds